Postdoctoral Research Fellow

Hamid  Badali

Postdoctoral Research Fellow

Fungus Testing Laboratory, Department of Pathology and Laboratory Medicine, University of Texas Health Science Center at San Antonio, TX, USA

Mentor:  Prof. Nathan P. Wiederhold

Phone:  2108727545



2011 Research Internship Canisius Wilhelmina Hospital (CWZ), Nijmegen, The Netherlands
2010 PhD Amsterdam Van University, The Netherlands
2003 MSc Mazandaran University of medical Sciences


The rapid and global emergence of azole resistance in A. fumigatus has drawn attention. Thus, a thorough understanding of its mechanisms of drug resistance requires extensive exploration. Therefore, as a postdoctoral fellow, my research has provided a compelling a link between the identification of genes whose mutations lead to drug resistance, which can provide a complete understanding of the molecular mechanisms underlying azole resistance. Previous studies demonstrated that the predominant mechanisms of resistance to azole observed in A. fumigatus are due to cyp51A mutations. Although, some unexplored non-cyp51A mutations that contribute to azole resistance in A. fumigatus has been investigated; unclear molecular mechanisms related to azole resistance require exploration. Reports of clinical isolates harboring different resistance mechanisms are currently limited, and studies involving large numbers of isolates are lacking.


2017 and 2018 ESCMID observership award for training at the Department of Medical Microbiology and Infectious Diseases, Canisius Wilhelmina Hospital, Nijmegen, Netherlands, 2017
2105 FEMS young investigators travel award for an outstanding presentation at the 6th Conference of Medical Microbiology (FEMS) June 7-11, 2015, Maastricht, the Netherlands
2009 ECMM young investigators travel award for an outstanding presentation at the 4th Trends in Medical Mycology, Athens, Greece, October 18-21, 2009
2009 ISHAM young investigators travel award for an outstanding presentation at the 17th Congress of The International Society for Human and Animal Mycology, Tokyo, Japan, May 2009
2006 PhD Scholarship award

Professional Memberships

2018-present European Confederation of Medical Mycology (ECMM), Fellow (FECMM)
2016-present Editor, Journal of Mycopathologia,
2016-present Member, American Society of Microbiology (ASM)
2015-present Member, European Society of Clinical Microbiology and Infection Disease (ESCMID).
2015-present Member, International Society of Human and Animal Mycology (ISHAM).



Vaezi A, Fakhim H, Ilkit M, Faeli L, Fakhar M, Alinejad V, Wiederhold NP, Badali H*. Rapid and Low-Cost Culture-Based Method for Diagnosis of Mucormycosis Using a Mouse Model. Front Microbiol. 2020 Mar 20;11:440. doi:10.3389/fmicb.2020.00440. eCollection 2020. PubMed PMID: 32265876

Salehi Z, Fatahi N, Taran M, Izadi A, Badali H, Hashemi SJ, Rezaie S, Daie Ghazvini R, Ghaffari M, Aala F, Barac A, Khodavaisy S. Comparison of in vitro antifungal activity of novel triazoles with available antifungal agents  against dermatophyte species caused tinea pedis. J Mycol Med. 2020 Jan 30:100935. doi: 10.1016/j.mycmed.2020.100935.

Taheri Rizi Z, Abastabar M, Fakhim H, Ilkit M, Ahangarkani F, Javidnia J, Haghani I, Meis JF, Badali H*. Antifungal Activity of a Novel Triazole, Efinaconazole and Nine Comparators against 354 Molecularly Identified Aspergillus Isolates. Mycopathologia. 2020 Feb 28. doi: 10.1007/s11046-020-00434-z.

Ahangarkani F, Puts Y, Nabili M, Khodavaisy S, Moazeni M, Salehi Z, Laal Kargar M, Badali H, Meis JF. First azole-resistant Aspergillus fumigatus isolates with the environmental TR(46) /Y121F/ T289A mutation in Iran. Mycoses. 2020 Feb 13. doi: 10.1111/myc.13064.

Ahangarkani F, Shokohi T, Rezai MS, Ilkit M, Mahmoodi Nesheli H, Karami H, Tamaddoni A, Alizadeh-Navaei R, Khodavaysi S, Meis JF, Badali H*. Epidemiological features of nosocomial candidaemia in children, infants, and neonates: A multicentre study in Iran. Mycoses. 2020 Jan 27. doi: 10.1111/myc.13053.

Badali H, Wiederhold NP. Antifungal Resistance Testing and Implications for Management. Curr Fungal Infect Rep 2019; 13, 274–283.

Ahangarkani F, Khodavaisy S, Mahmoudi S, Shokohi T, Rezai MS, Fakhim H, Dannaoui E, Faraji S, Chowdhary A, Meis JF, Badali H*. Indifferent effect of nonsteroidal anti-inflammatory drugs (NSAIDs) combined with fluconazole against multidrug-resistant Candida auris. Curr Med Mycol. 2019 Sep;5(3):26-30. doi: 10.18502/cmm.5.3.1743.

Bandalizadeh Z, Shokohi T, Badali H, Abastabar M, Babamahmoudi F, Davoodi L, Mardani M, Javanian M, Cheraghmakani H, Sepidgar AA, Badiee P, Khodavaisy S, Afshari SAK, Ahmadikia K, Seyedmousavi S. Molecular epidemiology and antifungal susceptibility profiles of clinical Cryptococcus neoformans/Cryptococcus gattii species complex. J Med Microbiol. 2019 Nov 21. doi: 10.1099/jmm.0.001101.

Ahmadi A, Mahmoudi S, Rezaie S, Hashem SJ, Dannaoui E, Badali H, Ghaffari M, Aala F, Izadi A, Maleki A,Meis JF, Khodavaisy S. In vitro synergy of echinocandins with triazoles against fluconazole-resistant Candida parapsilosis complex isolates. J Glob Antimicrob Resist. 2019 Nov 9. pii:S2213-7165(19)30295-4. doi: 10.1016/j.jgar.2019.11.003. PubMed PMID: 31715297.

Cornely OA, Alastruey-Izquierdo A, Arenz D, Chen SCA, Dannaoui E, Hochhegger B, Hoenigl M, Jensen HE, Lagrou K, Lewis RE, Mellinghoff SC, Mer M, Pana ZD, Seidel D, Sheppard DC, Wahba R, Akova M, Alanio A, Al-Hatmi AMS, Arikan-Akdagli S, Badali H, Ben-Ami R, Bonifaz A, Bretagne S, Castagnola E, Chayakulkeeree M, Colombo AL, Corzo-León DE, Drgona L, Groll AH, Guinea J, Heussel CP, Ibrahim AS, Kanj SS, Klimko N, Lackner M, Lamoth F, Lanternier F, Lass-Floerl C, Lee DG, Lehrnbecher T, Lmimouni BE, Mares M, Maschmeyer G, Meis JF, Meletiadis J, Morrissey CO, Nucci M, Oladele R, Pagano L, Pasqualotto A, Patel A, Racil Z, Richardson M, Roilides E, Ruhnke M, Seyedmousavi S, Sidharthan N, Singh N, Sinko J, Skiada A, Slavin M, Soman R, Spellberg B, Steinbach W, Tan BH, Ullmann AJ, Vehreschild JJ, Vehreschild MJGT, Walsh TJ, White PL, Wiederhold NP, Zaoutis T, Chakrabarti A; Mucormycosis ECMM MSG Global Guideline Writing Group. Global guideline for the diagnosis and management of mucormycosis: an initiative of the European Confederation of Medical Mycology in cooperation with the Mycoses Study Group Education and Research Consortium. Lancet Infect Dis. 2019 Nov 4. pii:S1473-3099(19)30312-3. doi: 10.1016/S1473-3099(19)30312-3. Review.

Pakshir K, Badali H, Nami S, Mirzaei H, Ebrahimzadeh V, Morovati H. Interactions between Immune Response to Fungal Infection and MicroRNAs; the Pioneer Tuners. Mycoses. 2020;63:4–20. doi: 10.1111/myc.13017. Review. PubMed PMID: 31597205.

Abastabar M, Jedi A, Guillot J, Ilkit M, Eidi S, Hedayati MT, Shokohi T, Daie Ghazvini R, Rezaei- Matehkolaei A, Katiraee F, Javidnia J, Ahmadi B, Badali H*. In Vitro Activities of 15 Antifungal Drugs against a Large Collection of Clinical Isolates of Microsporum canis. Mycoses. 2019 Aug 13. doi: 10.1111/myc.12986. PMID: 31408550.

Mahmoudi S, Rezaie S, Daie Ghazvini R, Hashemi SJ, Badali H, Foroumadi A, Diba K, Chowdhary A, Meis JF, Khodavaisy S. In Vitro Interaction of Geldanamycin with Triazoles and Echinocandins Against Common and Emerging Candida Species. Mycopathologia. 2019 Aug 10. doi: 10.1007/s11046-019-00370-7. PMID: 31401757.

Aryamloo P, Asgarian-Omran H, Aslani N, Hossein-Nataj H, Shokohi T, Badali H, Nabili M, Abdollahi Gohar A, Moazeni M. Cellular apoptosis: An alternative mechanism of action for caspofungin against Candida glabrata. Curr Med Mycol. 2019 Jun;5(2):9-15. doi: 10.18502/cmm.5.2.1155. PubMed PMID: 31321332; PubMed Central PMCID: PMC6626714.

Chow NA, de Groot T, Badali H, Abastabar M, Chiller TM, Meis JF. Potential Fifth Clade of Candida auris, Iran, 2018. Emerg Infect Dis. 2019 Sep 17; 25(9). doi: 10.3201/eid2509.190686. PubMed PMID: 31310230.

Mahmoudi Y, Badali H, Hashemi SM, Ansari M, Fakhim H, Fallah M, Shokrzadeh M, Emami S. New potent antifungal triazole alcohols containing N-benzylpiperazine carbodithioate moiety: Synthesis, in vitro evaluation and in silico study. Bioorg Chem. 2019 Jun 12; 90:103060. doi: 10.1016/j.bioorg.2019.103060. PubMed PMID: 31229796.

Mahmoudi S, Badali H, Rezaie S, Azarnezhad A, Barac A, Kord M, Ahmadikia K, Aala F, Ali Askari F, Meis JF, Khodavaisy S. A simple and low cost tetra-primer ARMS-PCR method for detection triazole-resistant Aspergillus fumigatus. Mol Biol Rep. 2019 Jun 18. doi: 10.1007/s11033-019-04909-1. PubMed PMID: 31214961.

Badali H*, Al-Hatmi AMS, Fakhim H, Moghaddasi A, Khodavaisy S, Vaezi A, Ahangarkani F, de Hoog GS, Meis JF. In vitro activity of nine antifungal agents against a global collection of Hortaea werneckii isolates, the agent of tinea nigra. Int J Antimicrob Agents. 2019 Jul;54(1):95-98. doi: 10.1016/j.ijantimicag.2019.05.006. Epub 2019 May 7. PMID: 31071468.

Ahangarkani F, Badali H, Rezai MS, Shokohi T, Abtahian Z, Mahmoodi Nesheli H, Karami H, Roilides E, Tamaddoni A. Candidemia due to Candida guilliermondii in an immunocompromised infant: a case report and review of literature. Curr Med Mycol. 2019 Mar;5(1):32-36. doi: 10.18502/cmm.5.1.535. PubMed PMID: 31049456; PMC6488283.

Aarstehfar A, Daneshnia F, Kord M, Roudbary M, Zarrinfar H, Fang W, Hashemi SJ, Najafzadeh MJ, Khodavaisy S, Pan W, Liao W, Badali H, Rezaie S, Zomorodian K, Hagen F, Boekhout T. Comparison of 21-Plex PCR and API 20C AUX, MALDI-TOF MS, and rDNA Sequencing for a Wide Range of Clinically Isolated Yeast Species: Improved Identification by Combining 21-Plex PCR and API 20C AUX as an Alternative Strategy for Developing Countries. Front Cell Infect Microbiol. 2019; 9:21. doi: 10.3389/fcimb.2019.00021. eCollection 2019. PMID: 30828570

Nasri E, Fakhim H, Vaezi A, Khalilzadeh S, Ahangarkani F, Laal Kargar M, Abtahian Z, Badali H*. Airway colonisation by Candida and Aspergillus species in Iranian cystic fibrosis patients. Mycoses. 2019; 62(5):434-440. doi: 10.1111/myc.12898. PMID: 30681747.

Abastabar M, Hosseini T, Valadan R, Lagzian M, Haghani I, Aslani N, Badali H*, Nouripour-Sisakht S, Nazeri M, Gholami S, Vakili M, Bowyer P, Shokohi T, Hedayati MT. Novel Point Mutations in cyp51A and cyp51B Genes Associated with Itraconazole and Posaconazole Resistance in Aspergillus clavatus Isolates. Microb Drug Resist. 2019 Jan 18.  doi: 10.1089/mdr.2018.0300. PubMed PMID: 30657433.

Arastehfar A, Fang W, Al-Hatmi AMS, Afsarian MH, Daneshnia F, Bakhtiari M, Sadati SK, Badali H, Khodavaysi S, Hagen F, Liao W, Pan W, Zomorodian K, Boekhout T. Unequivocal identification of an underestimated opportunistic yeast species, Cyberlindnera fabianii, and its close relatives using a dual-function PCR and literature review of published cases. Med Mycol. 2019 Jan 12. doi: 10.1093/mmy/myy148. PubMed PMID: 30649481.

Abastabar M, Haghani I, Ahangarkani F, Rezai MS, Taghizadeh Armaki M, Roodgari S, Kiakojuri K, Al-Hatmi AMS, Meis JF, Badali H*. Candida auris otomycosis in Iran and review of recent literature.  Mycoses. 2019; 62(2):101-105. doi: 10.1111/myc.12886. Review. PMID: 30585653.

Mohammadi R, Ansari Chaharsoghi M, Khorvash F, Kaleidari B, Sanei MH, Ahangarkani F, Abtahian Z, Meis JF, Badali H*. An unusual case of gastrointestinal basidiobolomycosis mimicking colon cancer; literature and review. J Mycol Med.2019; 29(1):75-79. doi: 10.1016/j.mycmed.2018.11.004. PMID: 30553627.

Chaturvedi V, Bouchara JP, Hagen F, Alastruey-Izquierdo A, Badali H, Bocca AL, Cano-Lira JF, Cao C, Chaturvedi S, Chotirmall SH, van Diepeningen AD, Gangneux JP, Guinea J, de Hoog S, Ilkit M, Kano R, Liu W, Martinez-Rossi NM, de Souza Carvalho Melhem M, Ono MA, Ran Y, Ranque S, de Almeida Soares CM, Sugita T, Thomas PA, Vecchiarelli A, Wengenack NL, Woo PCY, Xu J, Zancope-Oliveira RM. Eighty Years of Mycopathologia: A Retrospective Analysis of Progress Made in Understanding Human and Animal Fungal Pathogens. Mycopathologia. 2018 Dec; 183 (6):859-877. doi: 10.1007/s11046-018-0306-1. PubMed PMID: 30506286.

Arastehfar A, Fang W, Pan W, Lackner M, Liao W, Badiee P, Zomorodian K, Badali H, Hagen F, Lass-Flörl C, Boekhout T. YEAST PANEL multiplex PCR for identification of clinically important yeast species: stepwise diagnostic strategy, useful for developing countries. Diagn Microbiol Infect Dis. 2018 Sep 21. pii: S0732-8893(18)30381-X. doi: 10.1016/j.diagmicrobio.2018.09.007. PubMed PMID: 30377018.

Vaezi A, Fakhim H, Abtahian Z, Khodavaisy S, Geramishoar M, Alizadeh A, Meis JF, Badali H*. Frequency and Geographic Distribution of CARD9 Mutations in Patients With Severe Fungal Infections. Front Microbiol. 2018 Oct 12;9:2434. doi: 10.3389/fmicb.2018.02434.  eCollection 2018. Review. PubMed PMID: 30369919; PubMed Central PMCID: PMC6195074.

Pakshir K, Fakhim H, Vaezi A, Meis JF, Mahmoodi M, Zomorodian K, Javidnia J, Ansari S, Hagen F, Badali H*. Molecular epidemiology of environmental Cryptococcus species isolates based on amplified fragment length polymorphism. J Mycol Med. 2018 Oct 12. pii: S1156-5233(18)30164-1. doi: 10.1016/j.mycmed.2018.09.005. PMID: 30322827.

Al-Hatmi AMS, Castro MA, de Hoog GS, Badali H, Alvarado VF, Verweij PE, Meis JF, Zago VV. Epidemiology of Aspergillus species causing keratitis in Mexico. Mycoses. 2018 Sep 26. doi: 10.1111/myc.12855. PMID: 30256460.

Diba K, Makhdoomi K, Nasri E, Vaezi A, Javidnia J, Gharabagh DJ, Jazani NH, Reza Chawshin A, Badiee P, Badali H, Fakhim H. Emerging Candida species isolated from renal transplant recipients: Species distribution and susceptibility profiles. Microb Pathog. 2018 Sep 18. pii: S0882-4010(18)30956-2. doi: 10.1016/j.micpath.2018.09.026. [Epub ahead of print] PubMed PMID: 30240817.

Abastabar M, Haghani I, Shokohi T, Hedayati MT, Aghili SR, Jedi A, Dadashi S, Shabanzadeh S, Hosseini T,Aslani N, Meis JF, Badali H*. Low in Vitro Antifungal Activity of Tavaborole Against Yeasts and Moulds from Onychomycosis. Antimicrob Agents Chemother. 2018 Sep 17. pii: AAC.01632-18. doi: 10.1128/AAC.01632-18.

Arastehfar A, Fang W, Badali H, Vaezi A, Jiang W, Liao W, Pan W, Hagen F, Boekhout T. Low-Cost Tetraplex PCR for the Global Spreading Multi-Drug Resistant Fungus, Candida auris and Its Phylogenetic Relatives. Front Microbiol. 2018 May 29; 9:1119. doi: 10.3389/fmicb.2018.01119. eCollection 2018. PubMed PMID: 29896181; PubMed Central PMCID: PMC5987591.

Badali H, Rezaie S, Meis JF, Agha Kuchak Afshari S, Modiri M, Hagen F, Moazeni M, Mohammadi R, Khodavaisy S. Microsatellite genotyping of clinical Candida parapsilosis isolates. Curr Med Mycol. 2017 Dec;3(4):15-20. doi: 10.29252/cmm.3.4.15. PubMed PMID: 29707674; PubMed Central PMCID: PMC5917096.

Motahari K, Badali H, Hashemi SM, Fakhim H, Mirzaei H, Vaezi A, Shokrzadeh M, Emami S. Discovery of benzylthio analogs of fluconazole as potent antifungal agents. Future Med Chem. 2018 Apr 23. doi: 10.4155/fmc-2017-0295. PubMed PMID: 29683339.

Zoran T, Sartori B, Sappl L, Aigner M, Sánchez-Reus F, Rezusta A, Chowdhary A, Taj-Aldeen SJ, Arendrup MC, Oliveri S, Kontoyiannis DP, Alastruey-Izquierdo A, Lagrou K, Cascio GL, Meis JF, Buzina W, Farina C, Drogari-Apiranthitou M, Grancini A, Tortorano AM, Willinger B, Hamprecht A, Johnson E, Klingspor L, Arsic-Arsenijevic V, Cornely OA, Meletiadis J, Prammer W, Tullio V, Vehreschild JJ, Trovato L, Lewis RE, Segal E, Rath PM, Hamal P, Rodriguez-Iglesias M, Roilides E, Arikan-Akdagli S, Chakrabarti A, Colombo AL, Fernández MS, Martin-Gomez MT, Badali H, Petrikkos G, Klimko N, Heimann SM, Uzun O, Roudbary M, de la Fuente S, Houbraken J, Risslegger B, Lass-Flörl C, Lackner M. Azole-Resistance in Aspergillus terreus and Related Species: An Emerging Problem or a Rare Phenomenon? Front Microbiol. 2018 Mar 28;9:516. doi: 10.3389/fmicb.2018.00516. eCollection 2018. PubMed PMID: 29643840; PMCID: PMC5882871.

Fakhim H, Vaezi A, Dannaoui E, Sharma C, Mousavi B, Chowdhary A, Meis JF, Badali H*. In vitro combination of voriconazole with micafungin against azole-resistant clinical isolates of Aspergillus fumigatus from different geographical regions. Diagn Microbiol Infect Dis. 2018 Mar 8. pii: S0732-8893(18)30081-6. doi: 10.1016/j.diagmicrobio.2018.03.003. PubMed PMID: 29622284.

Rezaei-Matehkolaei A, Khodavaisy S, Alshahni MM, Tamura T, Satoh K, Abastabar M, Shokoohi GR, Ahmadi B, Kord M, Taghipour S, Makimura K, Badali H*. In Vitro Antifungal Activity of Novel Triazole Efinaconazole and Five Comparators Against Dermatophyte Isolates. Antimicrob Agents Chemother. 2018 Mar 12. pii: AAC.02423-17. doi: 10.1128/AAC.02423-17. PubMed PMID: 29530856.

Abastabar M, Al-Hatmi AMS, Moghaddam MV, de Hoog GS, Haghani I, Aghili SR, Shokohi T, Hedayati MT, Daie Ghazvini R, Kachuei R, Rezaei-Matehkolaei A, Makimura K, Meis JF, Badali H*. Potent Activity of Luliconazole, Lanoconazole and Eight Comparators against Molecularly Characterized Fusarium species. Antimicrob Agents Chemother. 2018 Mar 12. pii: AAC.00009-18. doi: 10.1128/AAC.00009-18. PubMed PMID: 29530844.

Vaezi A, Fakhim H, Javidnia J, Khodavaisy S, Abtahian Z, Vojoodi M, Nourbakhsh F, Badali H*. Pesticide behavior in paddy fields and development of azole-resistant Aspergillus fumigatus: Should we be concerned? J Mycol Med. 2018 Feb 26. pii: S1156-5233(17)30282-2. doi: 10.1016/j.mycmed.2017.12.007. PMID: 29496370.

Fakhim H, Vaezi A, Dannaoui E, Chowdhary A, Nasiry D, Faeli L, Meis JF, Badali H. Comparative virulence of Candida auris with Candida haemulonii, Candida glabrata and Candida albicans in a murine model. Mycoses 2018. doi: 10.1111/myc.12754. PMID: 29460345.

Aslani N, Janbabaei G, Abastabar M, Meis JF, Babaeian M, Khodavaisy S, Boekhout T, Badali H*. Identification of uncommon oral yeasts from cancer patients by MALDI-TOF mass spectrometry. BMC Infect Dis. 2018 Jan 8; 18(1):24. doi: 10.1186/s12879-017-2916-5. PubMed PMID: 29310582.

Shokohi T, Aslani N, Ahangarkani F, Meyabadi MF, Hagen F, Meis JF, Boekhout T, Kolecka A, Badali H. Candida infanticola and Candida spencermartinsiae yeasts: Possible emerging species in cancer patients. Microb Pathog. 2017 Dec 29. pii: S0882-4010(17)31403-1. doi: 10.1016/j.micpath.2017.12.069. PubMed PMID: 29292174.

Mohammadi R, Mohammadi A, Ashtari F, Khorvash F, Hakamifard A, Vaezi A, Javidnia J, Meis JF, Badali H*. Cerebral phaeohyphomycosis due to Rhinocladiella mackenziei in Persian Gulf region: A Case and Review. Mycoses. 2018; 61: 261–265. doi: 10.1111/myc.12734. PMID: 29205524.

Badiee P, Badali H, Boekhout T, Diba K, Moghadam AG, Hossaini Nasab A, Jafarian H, Mohammadi R, Mirhendi H, Najafzadeh MJ, Shamsizadeh A, Soltani J. Antifungal susceptibility testing of Candida species isolated from the immunocompromised patients admitted to ten university hospitals in Iran: comparison of colonizing and infecting isolates. BMC Infect Dis. 2017 Nov 21;17(1):727. doi: 10.1186/s12879-017-2825-7. PMID: 29157206

Agha Kuchak Afshari S, Rahimi H, Hashemi SJ, Daie Ghazvini R, Badali H, Aghaei Gharehbolagh S, Rezaie S. Evaluation of PCR-reverse line blot hybridization assay for simultaneous identification of medically important saprophytic fungi. J Mycol Med. 2017 Oct 31. pii: S1156-5233(17)30244-5. doi: 10.1016/j.mycmed.2017.09.002. PMID: 29100947.

Falahatinejad M, Vaezi A, Fakhim H, Abastabar M, Shokohi T, Zahedi N, Ansari S, Meis JF, Badali H*. Use of cell surface protein typing for genotyping of azole-resistant and -susceptible Aspergillus fumigatus isolates in Iran. Mycoses. 2018 Feb;61(2):143-147. doi: 10.1111/myc.12717. Epub 2017 Nov 22. PubMed PMID: 29064130.

Vaezi A, Fakhim H, Arastehfar A, Shokohi T, Hedayati MT, Khodavaisy S, Rezaei-Matehkolaei A, Badiee P, Hagen F, Lass-Flörl C, Dannaoui E, Meis JF, Badali H*. In vitro antifungal activity of amphotericin B and 11 comparators against Aspergillus terreus species complex. Mycoses. 2018 Feb;61(2):134-142. doi: 10.1111/myc.12716.

Hagen F, Lumbsch HT, Arsic Arsenijevic V, Badali H, Bertout S, Billmyre RB, Bragulat MR, Cabañes FJ, Carbia M, Chakrabarti A, Chaturvedi S, Chaturvedi V, Chen M, Chowdhary A, Colom MF, Cornely OA, Crous PW, Cuétara MS, Diaz MR, Espinel-Ingroff A, Fakhim H, Falk R, Fang W, Herkert PF, Ferrer Rodríguez C, Fraser JA, Gené J, Guarro J, Idnurm A, Illnait-Zaragozi MT, Khan Z, Khayhan K, Kolecka A, Kurtzman CP, Lagrou K, Liao W, Linares C, Meis JF, Nielsen K, Nyazika TK, Pan W, Pekmezovic M, Polacheck I, Posteraro B, de Queiroz Telles F Filho, Romeo O, Sánchez M, Sampaio A, Sanguinetti M, Sriburee P, Sugita T, Taj-Aldeen SJ, Takashima M, Taylor JW, Theelen B, Tomazin R, Verweij PE, Wahyuningsih R, Wang P, Boekhout T. Importance of Resolving Fungal Nomenclature: the Case of Multiple Pathogenic Species in the Cryptococcus Genus. mSphere. 2017 Aug 30;2(4). pii: e00238-17. doi: 10.1128/mSphere.00238-17. eCollection 2017 Jul-Aug. PubMed PMID: 28875175; PubMed Central PMCID: PMC5577652.

Shokoohi GR, Badali H, Mirhendi H, Ansari S, Rezaei-Matehkolaei A, Ahmadi B, Vaezi A, Alshahni MM, Makimura K. In Vitro Activity of Luliconazole, Lanoconazole, and Efinaconazole Compared with Five Antifungal Drugs Against Melanized Fungi and Relatives. Antimicrob Agents Chemother. 2017 Aug 28. pii: AAC.00635-17. doi: 10.1128/AAC.00635-17. PMID: 28848012.

Fakhim H, Chowdhary A, Prakash A, Vaezi A, Dannaoui E, Meis JF, Badali H*. Invitro interactions of echinocandins with triazoles against multidrug-tesistant Candida auris. Antimicrob Agents Chemother. 2017 Aug 28. pii: AAC.01056-17. doi: 10.1128/AAC.01056-17. PubMed PMID: 28848002.

Chowdhary A, Hagen F, Sharma C, Al-Hatmi AMS, Giuffrè L, Giosa D, Fan S, Badali H, Felice MR, de Hoog S, Meis JF, Romeo O. Whole genome-based amplified fragment length polymorphism analysis reveals genetic diversity in Candida africana. Front Microbiol. 2017 Apr 3; 8: 556. doi: 10.3389/fmicb.2017.00556. eCollection 2017. PubMed PMID: 28421052; PubMed Central PMCID: PMC5377543

Risslegger B, Zoran T, Lackner M, Aigner M, Sánchez-Reus F, Rezusta A, Chowdhary A, Taj-Aldeen SJ, Arendrup MC, Oliveri S, Kontoyiannis DP, Alastruey-Izquierdo A, Lagrou K, Lo Cascio G, Meis JF, Buzina W, Farina C, Drogari-Apiranthitou M, Grancini A, Tortorano AM, Willinger B, Hamprecht A, Johnson E, Klingspor L, Arsic-Arsenijevic V, Cornely OA, Meletiadis J, Prammer W, Tullio V, Vehreschild JJ, Trovato L, Lewis RE, Segal E, Rath PM, Hamal P, Rodriguez-Iglesias M, Roilides E, Arikan-Akdagli S, Chakrabarti A, Colombo AL, Fernández MS, Martin-Gomez MT, Badali H, Petrikkos G, Klimko N, Heimann SM,

Houbraken J, Uzun O, Edlinger M, Fuente S, Lass-Flörl C. A Prospective International Aspergillus terreus Survey: An EFISG, ISHAM and ECMM Joint Study. Clin Microbiol Infect. 2017 Oct; 23(10):776.e1-776.e5. doi: 10.1016/j.cmi.2017.04.012. PubMed PMID: 28412383.

Vaezi A, Fakhim H, Khodavaisy S, Alizadeh A, Nazeri M, Soleimani A, Boekhout T, Badali H. Epidemiological and mycological characteristics of candidemia in Iran: A systematic review and meta-analysis. J Mycol Med. 2017 Jun; 27(2):146-152. doi: 10.1016/j.mycmed.2017.02.007. Review. PubMed PMID: 28318900.

Yazdanparast SA, Mohseni S, De Hoog GS, Aslani N, Sadeh A, Badali H. Consistent high prevalence of Exophiala dermatitidis, a neurotropic opportunist, on railway sleepers. J Mycol Med. 2017 Jun; 27(2):180-187. doi: 10.1016/j.mycmed.2017.01.007. PubMed PMID: 28190754.

Rezai MS, Vaezi A, Fakhim H, Soleimani A, Mohammad Jafari H, Mohseni S, Badali H. Successful treatment with caspofungin of candiduria in a child with Wilms tumor; review of literature. J Mycol Med. 2017 Jun; 27(2):261-265. doi: 10.1016/j.mycmed.2017.01.006. PubMed PMID: 28188050.

Fakhim H, Emami S, Vaezi A, Hashemi SM, Faeli L, Diba K, Dannaoui E, Badali H*. In Vitro Activities of Novel Azole Compounds (ATTAF-1 and ATTAF-2) Against Fluconazole-Susceptible and -Resistant Isolates of Candida species. Antimicrob Agents Chemother. 2016 Oct 24. pii: AAC.01106-16. PMID: 27795371.

Gohar AA, Badali H, Shokohi T, Nabili M, Amirrajab N, Moazeni M. Expression Patterns of ABC Transporter Genes in Fluconazole-Resistant Candida glabrata. Mycopathologia. 2016 Oct 15. PMID: 27744635 DOI: 10.1007/s11046-016-0074-8

Abastabar M, Rahimi N, Meis JF, Aslani N, Khodavaisy S, Nabili M, Rezaei-Matehkolaei A, Makimura K, Badali H*. Potent Activities of Novel Imidazoles (lanoconazole and luliconazole) Against a Collection of Azole Resistant and Susceptible Aspergillus fumigatus strains. Antimicrob Agents Chemother. 2016 Aug 29. pii: AAC.01193-16.  PMID: 27572389.

Nabili M, Abdollahi Gohar A, Badali H, Mohammadi R, Moazeni M. Amino acid substitutions in Erg11p of azole-resistant Candida glabrata: Possible effective substitutions and homology modelling. J Glob Antimicrob Resist. 2016 Jun; 5:42-6. PMID: 27436465.

Baghi N, Shokohi T, Badali H, Makimura K, Rezaei-Matehkolaei A, Abdollahi M, Didehdar M, Haghani I, Abastabar M. In vitro activity of new azoles luliconazole and lanoconazole compared with ten other antifungal drugs against clinical dermatophyte isolates. Med Mycol. 2016 Oct 1; 54(7):757-63. PMID: 27118804.

Nabili M, Shokohi T, Moazeni M, Khodavaisy S, Aliyali M, Badiee P, Zarrinfar H, Hagen F, Badali H*. High Prevalence of Clinical and Environmental Triazole Resistant Aspergillus fumigatus in Iran: Is It a Challenging Issue?. J Med Microbiol. 2016 Jun; 65(6):468-75. PMID: 27008655

Khodavaisy S, Badali H, Hashemi SJ, Aala F, Nazeri M, Nouripour-Sisakht S, Sorkherizi MS, Amirizad K, Aslani N, Rezaie S. In vitro activities of five antifungal agents against 199 clinical and environmental isolates of Aspergillus flavus, an opportunistic fungal pathogen. J Mycol Med. 2016 Mar 2. pii: S1156-5233(16)00006-8. doi: 10.1016/j.mycmed. 2016.01.002. PMID: 26948143

Vaezi A, Moazeni M, Rahimi MT, de Hoog S, Badali H*. Mucormycosis in Iran: a systematic review. Mycoses. 2016 Jul;59(7):402-15. Review.

Khodavaisy S, Badali H, Rezaie S, Nabili M, Moghadam KG, Afhami S, Hagen F, Aala F, Hashemi SJ, Meis JF. Genotyping of clinical and environmental Aspergillus flavus isolates from Iran using microsatellites. Mycoses. 2016 Jan 12. doi: 10.1111/myc.12451. PMID: 26756650

Aliyali M, Badali H, Shokohi T, Moazeni M, Nosrati A, Godazandeh G, Dolatabadi, S, Nabili M. Coinfection of Pulmonary Hydatid Cyst and Aspergilloma: Case Report and Systematic Review. Mycopathologia. 2016 Apr; 181(3-4):255-65. PMID: 26666549

Badali H, Fakhim H, Zarei F, Nabili M, Vaezi A, Poorzad N, Dolatabadi S, Mirhendi H. In Vitro Activities of Five Antifungal Drugs Against Opportunistic Agents of Aspergillus Nigri Complex. Mycopathologia. 2016 Apr; 181(3-4):235-40. PMID: 26615417

Afsarian SM, Badali H, Shokohi T, Najafipour S. Molecular Diversity of Candida albicans Isolated from Immunocompromised Patients, Based on MLST Method. Iran J Public Health. 2015 Sep;44(9):1262-1269. PubMed PMID: 26587501; PMC4645784.

Deng S, Tsui CK, Gerrits van den Ende AH, Yang L, Najafzadeh MJ, Badali H, Li R, Hagen F, Meis JF, Sun J, Dolatabadi S, Papierok B, Pan W, de Hoog GS, Liao W. Global Spread of Human Chromoblastomycosis Is Driven by Recombinant Cladophialophora carrionii and Predominantly Clonal Fonsecaea Species. PLoS Negl Trop Dis. 2015 Oct 23; 9(10):e0004004. doi: 10.1371/journal.pntd.0004004.eCollection 2015 Oct. PubMed PMID: 26496430; PubMed Central PMCID: PMC4619687.

Afshar P, Hedayati MT, Aslani N, Khodavaisy S, Babamahmoodi F, Mahdavi MR, Dolatabadi S, Badali H*. First Autochthonous Coinfected Anthrax in an Immunocompetent Patient. Case Rep Med. 2015;2015:325093. doi:10.1155/2015/325093. Epub 2015 Sep 15. PubMed PMID: 26451148; PubMed Central PMCID: PMC4586956.

Mousavi B, Hedayati MT, Teimoori-Toolabi L, Guillot J, Alizadeh A, Badali H*. Cyp51A gene silencing using RNA interference in azole-resistant Aspergillus fumigatus. Mycoses. 2015 Dec; 58(12):699-706. doi: 10.1111/myc.12417. PubMed PMID: 26448519.

Badali H, Alian S, Fakhim H, Falahatinejad M, Moradi A, Mohammad Davoudi M, Hagen F, Meis JF. Cryptococcal meningitis due to Cryptococcus neoformans genotype AFLP1/VNI in Iran: a review of the literature. Mycoses. 2015 Dec; 58(12):689-93. doi: 10.1111/myc.12415. PMID: 26444438.

Badali H, Khodavaisy S, Fakhim H, de Hoog GS, Meis JF, Chowdhary A. In Vitro Susceptibility Profiles of Eight Antifungal Drugs Against Clinical and Environmental Strains of Phaeoacremonium. Antimicrob Agents Chemother. 2015 Dec; 59(12):7818-22. doi: 10.1128/AAC.01733-15. PMID: 26369976

Ansari S, Hedayati MT, Zomorodian K, Pakshir K, Badali H, Rafiei A, Ravandeh M, Seyedmousavi S. Molecular Characterization and In Vitro Antifungal Susceptibility of 316 Clinical Isolates of Dermatophytes in Iran. Mycopathologia. 2016 Feb; 181(1-2):89-95. doi: 10.1007/s11046-015-9941-y. Epub 2015 Sep 14. PMID: 26369643.

Yazdanparast SA, Khodavaisy S, Fakhim H, Shokohi T, Haghani I, Nabili M, Gholami H, Ahmadi I, Badali H*. Molecular Characterization of Highly Susceptible Candida africana from Vulvovaginal Candidiasis. Mycopathologia; 2015 Dec; 180(5-6):317-23. doi: 10.1007/s11046-015-9924-z. PMID: 26183965.

Badali H, Mohammadi R, Mashedi O, de Hoog GS, Meis JF. In vitro susceptibility patterns of clinically important Trichophyton and Epidermophyton species against nine antifungal drugs. Mycoses. 2015 May; 58(5):303-7. doi: 10.1111/myc.12315. PMID: 25757042.

Hashemi SM, Badali H, Irannejad H, Shokrzadeh M, Emami S. Synthesis and biological evaluation of fluconazole analogs with triazole-modified scaffold as potent antifungal agents. Bioorg Med Chem. 2015 Apr 1; 23(7):1481-91. doi: 10.1016/j.bmc.2015.02.011. PMID: 25740636.

Didehdar M, Gokanian A, Sofian M, Mohammadi S, Mohammadi R, Aslani N, Haghani I, Badali H*. First fatal cerebral phaeohyphomycosis due to Rhinocladiella mackenziei in Iran, based on ITS rDNA. J Mycol Med. 2015 Mar;25(1):81-6. doi: 10.1016/j.mycmed.2014.11.003; PMID:25637429.

Afsarian MH, Badali H, Boekhout T, Shokohi T, Katiraee F. Multilocus sequence typing of Candida albicans isolates from Burn Intensive Care Unit (BICU) in Iran. J Med Microbiol. 2015 Mar;64(Pt 3):248-53. doi: 10.1099/jmm.0.000015. PMID: 25596113.

Hashemi SM, Badali H, Faramarzi MA, Samadi N, Afsarian MH, Irannejad H, Emami S. Novel triazole alcohol antifungals derived from fluconazole: design, synthesis, and biological activity. Mol Divers 2015; 19:15–27. PMID: 25182365.

Babazadeh-Qazijahani M, Badali H, Irannejad H, Afsarian MH, Emami S. Imidazolylchromanones containing non-benzylic oxime ethers: synthesis and molecular modeling study of new azole antifungals selective against Cryptococcus gattii. Eur J Med Chem 2014; 76: 264 -73. doi: 10.1016/j.ejmech.2014.02.019. PubMed PMID: 24583607.

Pei-Ying Feng, G. S. de Hoog, M. J. Najafzadeh, A. H. G. Gerrits van den Ende, J. B. Stielow, H. Badali, W. A. Boeger, V. A. Vicente. Cladophialophora abundans, a novel species of Chaetothyriales isolated from the natural environment. Mycological Progress 2014; DOI 10.1007/s11557-013-0924-4

Fesharaki SH, Haghani I, Mousavi B, Kargar ML, Boroumand M, Anvari MS, Abbasi K, Meis JF, Badali H*. Endocarditis due to a co-infection of Candida albicans and Candida tropicalis in a drug abuser. J Med Microbiol. 2013 Nov; 62 (Pt 11):1763-7.  doi: 10.1099/jmm.0.060954-0. PubMed PMID: 23973985.

Badali H, Vaezi A, Haghani I, Yazdanparast SA, Hedayati MT, Mousavi B, Ansari S, Hagen F, Meis JF, Chowdhary A. Environmental study of azole-resistant Aspergillus fumigatus with TR34/L98H mutations in the cyp51A gene in Iran. Mycoses. 2013 Nov; 56(6):659-63. doi: 10.1111/myc.12089. PubMed PMID: 23668594.

Badali H, Fernández-González M, Mousavi B, Illnait-Zaragozi MT, González-Rodríguez JC, de Hoog GS, Meis JF. Chromoblastomycosis due to Fonsecaea pedrosoi and F. monophora in Cuba. Mycopathologia. 2013 Jun; 175(5-6):439-44. doi: 10.1007/s11046-013-9634-3. PubMed PMID: 23471535.

Bonifaz A, Davoudi MM, de Hoog GS, Padilla-Desgarennes C, Vázquez-González D, Navarrete G, Meis JF,Badali H*. Severe disseminated phaeohyphomycosis in an immunocompetent patient caused by Veronaea botryosa. Mycopathologia. 2013 Jun; 175(5-6):497-503. doi: 10.1007/s11046-013-9632-5. PubMed PMID: 23471534.

Hamzehei H, Yazdanparast SA, Davoudi MM, Khodavaisy S, Golehkheyli M, Ansari S, de Hoog GS, Badali H*. Use of rolling circle amplification to rapidly identify  species of Cladophialophora potentially causing human infection. Mycopathologia. 2013 Jun; 175(5-6):431-8. doi: 10.1007/s11046-013-9630-7. PubMed PMID: 23471533.

Badali H, Yazdanparast SA, Bonifaz A, Mousavi B, de Hoog GS, Klaassen CH, Meis JF. Veronaea botryosa: molecular identification with amplified fragment length polymorphism (AFLP) and in vitro antifungal susceptibility. Mycopathologia. 2013 Jun; 175(5-6):505-13. doi: 10.1007/s11046-013-9631-6. PubMed PMID: 23463524.

Pattanaprichakul P, Bunyaratavej S, Leeyaphan C, Sitthinamsuwan P, Sudhadham M, Muanprasart C, Feng P, Badali H, de Hoog GS. An unusual case of Eumycetoma caused by Exophiala jeanselmei after a sea urchin injury. Mycoses. 2013 Jul;56(4):491-4. doi: 10.1111/myc.12050. PubMed PMID: 23406480.

Deng S, de Hoog GS, Badali H, Yang L, Najafzadeh MJ, Pan B, Curfs-Breuker I, Meis JF, Liao W. In vitro antifungal susceptibility of Cladophialophora carrionii, an agent of human chromoblastomycosis. Antimicrob Agents Chemother. 2013 Apr; 57(4):1974-7. doi: 10.1128/AAC.02114-12. PubMed PMID: 23380718;

Mirhendi H, Fatemi MJ, Bateni H, Hajabdolbaghi M, Geramishoar M, Ahmadi B, Badali H*. First case of disseminated phaeohyphomycosis in an immunocompetent individual due to Alternaria malorum. Med Mycol. 2013 Feb; 51(2):196-202. doi: 10.3109/13693786.2012.707338. PubMed PMID: 22871097.

Agha Kuchak Afshari S, Shokohi T, Aghili R, Badali H. Epidemiology and molecular characterization of Cryptococcus neoformans isolated from pigeon excreta in Mazandaran province, northern Iran. J Mycol Med. 2012 Jun; 22(2):160-6. doi: 0.1016/j.mycmed.2012.02.002. PubMed PMID: 23518018.

Badali H, Chander J, Bayat M, Seyedmousavi S, Sidhu S, Rani H, Attri A, Handa U, Meis JF, de Hoog GS. Multiple subcutaneous cysts due to Exophiala spinifera in an immunocompetent patient. Med Mycol. 2012 Feb; 50(2):207-13. doi: 10.3109/13693786.2011.603367. PubMed PMID: 21916783.

de Hoog GS, Vicente VA, Najafzadeh MJ, Harrak MJ, Badali H, Seyedmousavi S. Waterborne Exophiala species causing disease in cold-blooded animals. Persoonia. 2011 Dec; 27:46-72. doi: 10.3767/003158511X614258. PubMed PMID: 22403476

Seyedmousavi S, Badali H, Chlebicki A, Zhao J, Prenafeta-Boldú FX, De Hoog GS. Exophiala sideris, a novel black yeast isolated from environments polluted with toxic alkyl benzenes and arsenic. Fungal Biol. 2011 Oct; 115(10):1030-7. doi: 10.1016/j.funbio.2011.06.004. PubMed PMID: 21944215.

Badali H, Prenafeta-Boldu FX, Guarro J, Klaassen CH, Meis JF, de Hoog GS. Cladophialophora psammophila, a novel species of Chaetothyriales with a potential use in the bioremediation of volatile aromatic hydrocarbons. Fungal Biol. 2011 Oct; 115(10):1019-29. doi: 10.1016/j.funbio.2011.04.005. PubMed PMID: 21944214.

Sun J, Zhang J, Najafzadeh MJ, Badali H, Li X, Xi L, de Hoog GS. Melanization of a meristematic mutant of Fonsecaea monophora increases tolerance to stress factors while no effects on antifungal susceptibility. Mycopathologia. 2011 Nov; 172(5):373-80. doi: 10.1007/s11046-011-9439-1. PubMed PMID: 21706309.

Badali H, de Hoog GS, Sudhadham M, Meis JF. Microdilution in vitro antifungal susceptibility of Exophiala dermatitidis, a systemic opportunist. Med Mycol. 2011 Nov; 49(8):819-24. doi: 10.3109/13693786.2011.583285. PubMed PMID: 21612562.

Badali H, Hedayati MT, Bahoosh M, Kasir A, Ghasemi M, Motahari J, Meis JF, De Hoog GS. Exophiala oligosperma involved in a refractory chronic rhinosinusitis. Eur Rev Med Pharmacol Sci. 2011 Mar; 15(3):319-23. PubMed PMID: 21528779.

Badali H, Chander J, Gupta A, Rani H, Punia RS, De Hoog GS, Meis JF. Fatal cerebral phaeohyphomycosis in an immunocompetent individual due to Thielavia subthermophila. J Clin Microbiol. 2011 Jun; 49(6):2336-41. doi: 10.1128/JCM.02648-10. PubMed PMID: 21411574

Badali H, Chander J, Gulati N, Attri A, Chopra R, Najafzadeh MJ, Chhabra S, Meis JF, de Hoog GS. Subcutaneous phaeohyphomycotic cyst caused by Pyrenochaeta romeroi. Med Mycol. 2010 Aug; 48(5):763-8. PubMed PMID: 20648971.

Badali H, de Hoog GS, Curfs-Breuker I, Klaassen CH, Meis JF. Use of amplified fragment length polymorphism to identify 42 Cladophialophora strains related to cerebral phaeohyphomycosis with in vitro antifungal susceptibility. J Clin Microbiol. 2010 Jul; 48(7):2350-6. doi: 10.1128/JCM.00653-10. PubMed PMID: 20421439

Najafzadeh MJ, Badali H, Illnait-Zaragozi MT, De Hoog GS, Meis JF. In vitro activities of eight antifungal drugs against 55 clinical isolates of Fonsecaea spp. Antimicrob Agents Chemother. 2010 Apr; 54(4):1636-8. doi: 10.1128/AAC.01655-09. PubMed PMID: 20086140

Badali H, Bonifaz A, Barrón-Tapia T, Vázquez-González D, Estrada-Aguilar L, Oliveira NM, Sobral Filho JF, Guarro J, Meis JF, De Hoog GS. Rhinocladiella aquaspersa, proven agent of verrucous skin infection and a novel type of chromoblastomycosis. Med Mycol. 2010 Aug; 48(5):696-703. doi: 10.3109/13693780903471073. PubMed PMID: 20055741.

Badali H, Chander J, Bansal S, Aher A, Borkar SS, Meis JF, De Hoog GS. First autochthonous case of Rhinocladiella mackenziei cerebral abscess outside the Middle East. J Clin Microbiol. 2010 Feb;48(2):646-9. doi: 10.1128/JCM.01855-09. PubMed PMID: 20007402

Badali H, de Hoog GS, Curfs-Breuker I, Meis JF. In vitro activities of antifungal drugs against Rhinocladiella mackenziei, an agent of fatal brain infection. J Antimicrob Chemother. 2010 Jan; 65(1):175-7. doi: 10.1093/jac/dkp390. PubMed PMID: 19854862.

Badali H, Najafzadeh MJ, van Esbroeck M, van den Enden E, Tarazooie B, Meis JF, de Hoog GS. The clinical spectrum of Exophiala jeanselmei, with a case report and in vitro antifungal susceptibility of the species. Med Mycol. 2010 Mar; 48(2):318-27. doi: 10.1080/13693780903148353. PubMed PMID: 19642051.

Najafzadeh MJ, Rezusta A, Cameo MI, Zubiri ML, Yus MC, Badali H, Revillo MJ, De Hoog GS. Successful treatment of chromoblastomycosis of 36 years duration caused by Fonsecaea monophora. Med Mycol. 2010 Mar; 48(2):390-3. doi: 10.1080/13693780903008813. PubMed PMID: 19488919.

Badali H, De Hoog GS, Curfs-Breuker I, Andersen B, Meis JF. In vitro activities of eight antifungal drugs against 70 clinical and environmental isolates of Alternaria species. J Antimicrob Chemother. 2009 Jun; 63(6):1295-7. doi: 10.1093/jac/dkp109. PubMed PMID: 19336452.

Najafzadeh MJ, Gueidan C, Badali H, Van Den Ende AH, Xi L, De Hoog GS. Genetic diversity and species delimitation in the opportunistic genus Fonsecaea. Med Mycol. 2009 Feb; 47(1):17-25. doi: 10.1080/13693780802527178. PubMed PMID: 19107635.

Badali H, Carvalho VO, Vicente V, Attili-Angelis D, Kwiatkowski IB, Gerrits Van Den Ende AH, De Hoog GS. Cladophialophora saturnica sp. nov., a new opportunistic species of Chaetothyriales revealed using molecular data. Med Mycol. 2009 Feb; 47(1):51-62. doi: 10.1080/13693780802291452. PubMed PMID: 18720218.

Badali H, Gueidan C, Najafzadeh MJ, Bonifaz A, van den Ende AH, de Hoog GS. Biodiversity of the genus Cladophialophora. Stud Mycol. 2008; 61:175-91. doi: 10.3114/sim.2008.61.18. PubMed PMID: 19287540

Bonifaz A, Badali H, de Hoog GS, Cruz M, Araiza J, Cruz MA, Fierro L, Ponce RM. Tinea nigra by Hortaea werneckii, a report of 22 cases from Mexico. Stud Mycol. 2008; 61:77-82. doi: 10.3114/sim.2008.61.07. PubMed PMID: 19287529

de Hoog GS, Nishikaku AS, Fernandez-Zeppenfeldt G, Padín-González C, Burger E, Badali H, Richard-Yegres N, van den Ende AH. Molecular analysis and pathogenicity of the Cladophialophora carrionii complex, with the description of a novel species. Stud Mycol. 2007; 58:219-34. doi: 10.3114/sim.2007.58.08. PubMed PMID: 18491001